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» Maximum likelihood of phylogenetic networks
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BIBE
2003
IEEE
13 years 10 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
IJCBDD
2008
113views more  IJCBDD 2008»
13 years 5 months ago
Parsimony accelerated Maximum Likelihood searches
: Phylogenetic search is a key tool used in a variety of biological research endeavors. However, this search problem is known to be computationally difficult, due to the astronomic...
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll,...
FPL
2009
Springer
79views Hardware» more  FPL 2009»
13 years 9 months ago
A reconfigurable architecture for the Phylogenetic Likelihood Function
As FPGA devices become larger, more coarse-grain modules coupled with large scale reconfigurable fabric become available, thus enabling new classes of applications to run effici...
Nikolaos Alachiotis, Alexandros Stamatakis, Euripi...
GCB
2009
Springer
105views Biometrics» more  GCB 2009»
13 years 11 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler
ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
13 years 5 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...