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BIOINFORMATICS
2004
40views more  BIOINFORMATICS 2004»
13 years 5 months ago
Mismatch string kernels for discriminative protein classification
Christina S. Leslie, Eleazar Eskin, Adiel Cohen, J...
NIPS
2008
13 years 6 months ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
13 years 7 months ago
On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification
Recent studies in protein sequence analysis have leveraged the power of unlabeled data. For example, the profile and mismatch neighborhood kernels have shown significant improveme...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
EVOW
2006
Springer
13 years 9 months ago
Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines
Infection by the human papillomavirus (HPV) is associated with the development of cervical cancer. HPV can be classified to highand low-risk type according to its malignant potenti...
Sun Kim, Byoung-Tak Zhang
IJDMB
2008
128views more  IJDMB 2008»
13 years 5 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic