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BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
13 years 10 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
AAAI
2008
13 years 7 months ago
Using Answer Set Programming and Lambda Calculus to Characterize Natural Language Sentences with Normatives and Exceptions
One way to solve the knowledge acquisition bottleneck is to have ways to translate natural language sentences and discourses to a formal knowledge representation language, especia...
Chitta Baral, Juraj Dzifcak, Tran Cao Son
ICLP
2009
Springer
14 years 5 months ago
Metabolic Network Expansion with Answer Set Programming
Abstract. We propose a qualitative approach to elaborating the biosynthetic capacities of metabolic networks. In fact, large-scale metabolic networks as well as measured datasets s...
Torsten Schaub, Sven Thiele
ICTAI
2010
IEEE
13 years 2 months ago
The BioASP Library: ASP Solutions for Systems Biology
Abstract--Today's molecular biology is confronted with enormous amounts of data, generated by new high-throughput technologies, along with an increasing number of biological m...
Martin Gebser, Arne König, Torsten Schaub, Sv...
ASP
2005
Springer
13 years 10 months ago
Modeling Hybrid Domains Using Process Description Language
In previous work, action languages have predominantly been concerned with domains in which values are static unless changed by an action. Real domains, however, often contain value...
Sandeep Chintabathina, Michael Gelfond, Richard Wa...