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BIBM
2008
IEEE
134views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
New Approaches to Compare Phylogenetic Search Heuristics
We present new and novel insights into the behavior of two maximum parsimony heuristics for building evolutionary trees of different sizes. First, our results show that the heuris...
Seung-Jin Sul, Suzanne Matthews, Tiffani L. Willia...
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang
BIOINFORMATICS
2010
139views more  BIOINFORMATICS 2010»
13 years 4 months ago
adephylo: new tools for investigating the phylogenetic signal in biological traits
Summary: adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or...
Thibaut Jombart, François Balloux, St&eacut...
BMCBI
2010
135views more  BMCBI 2010»
13 years 4 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
CP
2000
Springer
13 years 9 months ago
New Search Heuristics for Max-CSP
Abstract. This paper evaluates the power of a new scheme that generates search heuristics mechanically. This approach was presented and evaluated rst in the context of optimization...
Kalev Kask