314 search results - page 2 / 63 » On Suboptimal Alignments of Biological Sequences |
RECOMB
2007
Springer
14 years 5 months ago
2007
Springer
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
BMCBI
2010
13 years 5 months ago
2010
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
CPM
1994
Springer
13 years 9 months ago
1994
Springer
Recently, a new compact representation for suboptimal alignments was proposed by Naor and Brutlag (1993). The kernel of that representation is a minimal directed acyclic graph (DAG...
WABI
2007
Springer
13 years 11 months ago
2007
Springer
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...