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» On Using Fuzzy Contact Maps for Protein Structure Comparison
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FUZZIEEE
2007
IEEE
13 years 11 months ago
On Using Fuzzy Contact Maps for Protein Structure Comparison
The comparison of protein structures is an important problem in Bioinformatics, and Soft Computing techniques were recently introduced for achieving a better representation and po...
Juan Ramón González, David A. Pelta
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
BMCBI
2010
120views more  BMCBI 2010»
13 years 5 months ago
Optimal contact definition for reconstruction of Contact Maps
Background: Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being pref...
Jose M. Duarte, Rajagopal Sathyapriya, Henning Ste...
KDD
2002
ACM
154views Data Mining» more  KDD 2002»
14 years 5 months ago
Mining Protein Contact Maps
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...
BMCBI
2008
121views more  BMCBI 2008»
13 years 5 months ago
A simple and fast heuristic for protein structure comparison
Background: Protein structure comparison is a key problem in bioinformatics. There exist several methods for doing protein comparison, being the solution of the Maximum Contact Ma...
David A. Pelta, Juan Ramón González,...