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» PSI: indexing protein structures for fast similarity search
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DATESO
2007
157views Database» more  DATESO 2007»
13 years 6 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
SSDBM
2009
IEEE
192views Database» more  SSDBM 2009»
13 years 11 months ago
MLR-Index: An Index Structure for Fast and Scalable Similarity Search in High Dimensions
High-dimensional indexing has been very popularly used for performing similarity search over various data types such as multimedia (audio/image/video) databases, document collectio...
Rahul Malik, Sangkyum Kim, Xin Jin, Chandrasekar R...
APBC
2007
110views Bioinformatics» more  APBC 2007»
13 years 6 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
RECOMB
2003
Springer
14 years 5 months ago
Approximation of protein structure for fast similarity measures
It is shown that structural similarity between proteins can be decided well with much less information than what is used in common similarity measures. The full C representation c...
Fabian Schwarzer, Itay Lotan
BMCBI
2007
124views more  BMCBI 2007»
13 years 4 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...