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PROCEDIA
2010
154views more  PROCEDIA 2010»
12 years 11 months ago
Parallel computation of phylogenetic consensus trees
The field of bioinformatics is witnessing a rapid and overwhelming accumulation of molecular sequence data, predominantly driven by novel wet-lab sequencing techniques. This trend...
Andre J. Aberer, Nicholas D. Pattengale, Alexandro...
WABI
2004
Springer
109views Bioinformatics» more  WABI 2004»
13 years 10 months ago
Online Consensus and Agreement of Phylogenetic Trees
Computational heuristics are the primary methods for reconstruction of phylogenetic trees on large datasets. Most large-scale phylogenetic analyses produce numerous trees that are ...
Tanya Y. Berger-Wolf
ACL2
2006
ACM
13 years 10 months ago
Phylogenetic trees in ACL2
Biologists studying the evolutionary relationships between organisms use software packages to solve the computational problems they encounter. Several of these problems involve th...
Warren A. Hunt Jr., Serita M. Nelesen
IPPS
2006
IEEE
13 years 10 months ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...
ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
13 years 4 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...