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IPPS
2006
IEEE
13 years 10 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
IPPS
2010
IEEE
13 years 2 months ago
Initial characterization of parallel NFS implementations
Parallel NFS (pNFS) is touted as an emergent standard protocol for parallel I/O access in various storage environments. Several pNFS prototypes have been implemented for initial v...
Weikuan Yu, Jeffrey S. Vetter
EUROPAR
2007
Springer
13 years 10 months ago
Fine Tuning Algorithmic Skeletons
Abstract. Algorithmic skeletons correspond to a high-level programming model that takes advantage of nestable programming patterns to hide the complexity of parallel/distributed ap...
Denis Caromel, Mario Leyton
CLUSTER
2006
IEEE
13 years 8 months ago
A Performance Instrumentation Framework to Characterize Computation-Communication Overlap in Message-Passing Systems
Effective overlap of computation and communication is a well understood technique for latency hiding and can yield significant performance gains for applications on high-end compu...
Aniruddha G. Shet, P. Sadayappan, David E. Bernhol...
GRID
2004
Springer
13 years 10 months ago
Toward Characterizing the Performance of SOAP Toolkits
The SOAP protocol underpins Web services as the standard mechanism for exchanging information in a distributed environment. The XML-based protocol offers advantages including exte...
Madhusudhan Govindaraju, Aleksander Slominski, Ken...