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» Pathway Logic: Executable Models of Biological Networks
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ENTCS
2002
125views more  ENTCS 2002»
13 years 4 months ago
Pathway Logic: Executable Models of Biological Networks
In this paper we describe the use of the rewriting logic based Maude tool to model and analyze mammalian signaling pathways. We discuss the representation of the underlying biolog...
Steven Eker, Merrill Knapp, Keith Laderoute, Patri...
IJCNN
2007
IEEE
13 years 11 months ago
Modeling Overlapping Execution/Observation Brain Pathways
— Recent brain imaging studies on primates revealed that a network of brain areas is activated both during observation and during execution of movements. The present work aims at...
Michail Maniadakis, Manolis Hourdakis, Panos E. Tr...
BIBE
2007
IEEE
113views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
Quantitative and Probabilistic Modeling in Pathway Logic
—This paper presents a study of possible extensions of Pathway Logic to represent and reason about semiquantitative and probabilistic aspects of biological processes. The underly...
Alessandro Abate, Yu Bai, Nathalie Sznajder, Carol...
BIOINFORMATICS
2007
117views more  BIOINFORMATICS 2007»
13 years 4 months ago
Mining biological networks for unknown pathways
Biological pathways provide significant insights on the interaction mechanisms of molecules. Presently, many essential pathways still remain unknown or incomplete for newly sequen...
Ali Cakmak, Gultekin Özsoyoglu
JELIA
2004
Springer
13 years 10 months ago
Towards a Logical Analysis of Biochemical Pathways
Biochemical pathways or networks are generic representations used to model many different types of complex functional and physical interactions in biological systems. Models based ...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...