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BIOINFORMATICS
2010
77views more  BIOINFORMATICS 2010»
13 years 5 months ago
Pathway discovery in metabolic networks by subgraph extraction
Karoline Faust, Pierre Dupont, Jérôme...
BMCBI
2007
126views more  BMCBI 2007»
13 years 4 months ago
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation
Background: Biochemical investigations over the last decades have elucidated an increasingly complete image of the cellular metabolism. To derive a systems view for the regulation...
Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer ...
JCB
2007
118views more  JCB 2007»
13 years 4 months ago
Discovering Topological Motifs Using a Compact Notation
Discovering topological motifs or common topologies in one or more graphs is an important as well as an interesting problem. It had been classically viewed as the subgraph isomorp...
Laxmi Parida
BMCBI
2006
166views more  BMCBI 2006»
13 years 5 months ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto
BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...