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» Performance of Runtime Optimization on BLAST
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IPPS
2006
IEEE
14 years 4 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
MICRO
2003
IEEE
100views Hardware» more  MICRO 2003»
14 years 4 months ago
The Performance of Runtime Data Cache Prefetching in a Dynamic Optimization System
Traditional software controlled data cache prefetching is often ineffective due to the lack of runtime cache miss and miss address information. To overcome this limitation, we imp...
Jiwei Lu, Howard Chen, Rao Fu, Wei-Chung Hsu, Bobb...
FPL
2001
Springer
78views Hardware» more  FPL 2001»
14 years 3 months ago
Run-Time Performance Optimization of an FPGA-Based Deduction Engine for SAT Solvers
Andreas Dandalis, Viktor K. Prasanna, Bharani Thir...
BMCBI
2006
141views more  BMCBI 2006»
13 years 10 months ago
Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences
Background: The number of k-words shared between two sequences is a simple and effcient alignment-free sequence comparison method. This statistic, D2, has been used for the cluste...
Sylvain Forêt, Miriam R. Kantorovitz, Conrad...
JUCS
2007
102views more  JUCS 2007»
13 years 10 months ago
The Use of Runtime Reconfiguration on FPGA Circuits to Increase the Performance of the AES Algorithm Implementation
: This article presents an architecture that encrypts data with the AES algorithm. This architecture can be implemented on the Xilinx Virtex II FPGA family, by applying pipelining ...
Oscar Pérez, Yves Berviller, Camel Tanougas...