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» Physical Mapping of Chromosomes Using Unique Probes
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ISMB
1994
13 years 5 months ago
Genetic Map Construction with Constraints
Apilot program,CME,is describedfor generatinga physical genetic mapfromhybridization fingerprintingdata. CMEis implementedin the parallel constraint logic programming language Eli...
Dominic A. Clark, Christopher J. Rawlings, Sylvie ...
IFIP
2004
Springer
13 years 10 months ago
Imperfectness of Data for STS-Based Physical Mapping
In the STS-based mapping, we are requested to obtain the correct order of probes in a DNA sequence from a given set of fragments or equivalently a hybridization matrix A. It is wel...
Hiro Ito, Kazuo Iwama, Takeyuki Tamura
BMCBI
2010
111views more  BMCBI 2010»
13 years 4 months ago
Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays
Background: Current commercial high-density oligonucleotide microarrays can hold millions of probe spots on a single microscopic glass slide and are ideal for studying the transcr...
Hedda Høvik, Tsute Chen
RECOMB
2000
Springer
13 years 8 months ago
Contig selection in physical mapping
In physical mapping, one orders a set of genetic landmarks or a library of cloned fragments of DNA according to their position in the genome. Our approach to physical mapping divi...
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, ...
BMCBI
2010
161views more  BMCBI 2010»
13 years 2 months ago
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Background: Physical maps are the substrate of genome sequencing and map-based cloning and their construction relies on the accurate assembly of BAC clones into large contigs that...
Zeev Frenkel, Etienne Paux, David I. Mester, Cathe...