38 search results - page 7 / 8 » PocketMatch: A new algorithm to compare binding sites in pro... |
BMCBI
2010
13 years 5 months ago
2010
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
BIBE
2005
IEEE
13 years 11 months ago
2005
IEEE
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
BMCBI
2005
13 years 5 months ago
2005
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
BMCBI
2008
13 years 5 months ago
2008
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...