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RECOMB
2006
Springer
14 years 6 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
ALT
2004
Springer
14 years 2 months ago
Relative Loss Bounds and Polynomial-Time Predictions for the k-lms-net Algorithm
We consider a two-layer network algorithm. The first layer consists of an uncountable number of linear units. Each linear unit is an LMS algorithm whose inputs are first “kerne...
Mark Herbster
FCT
2003
Springer
13 years 11 months ago
Complexity of Approximating Closest Substring Problems
The closest substring problem, where a short string is sought that minimizes the number of mismatches between it and each of a given set of strings, is a minimization problem with ...
Patricia A. Evans, Andrew D. Smith
STOC
2005
ACM
143views Algorithms» more  STOC 2005»
13 years 11 months ago
On strip packing With rotations
We present an asymptotic fully polynomial time approximation scheme for two-dimensional strip packing with rotations. In this problem, a set of rectangles need to be packed into a...
Klaus Jansen, Rob van Stee
DAC
2009
ACM
14 years 6 months ago
A fully polynomial time approximation scheme for timing driven minimum cost buffer insertion
As VLSI technology enters the nanoscale regime, interconnect delay has become the bottleneck of the circuit timing. As one of the most powerful techniques for interconnect optimiz...
Shiyan Hu, Zhuo Li, Charles J. Alpert