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» Probabilistic structural alignment of RNA sequences
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ICASSP
2007
IEEE
13 years 11 months ago
Toward Turbo Decoding of RNA Secondary Structure
We propose an iterative probabilistic algorithm for estimation of RNA secondary structure using sequence data from two homologous sequences. The method is intended to exploit inte...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
BIBE
2006
IEEE
132views Bioinformatics» more  BIBE 2006»
13 years 11 months ago
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments
Ribonucleic acid (RNA) molecules contain the genetic information that regulates the functions of organisms. Given two different molecules, a preserved function corresponds to a pr...
Rimon Mikhaiel, Guohui Lin, Eleni Stroulia
RECOMB
2006
Springer
14 years 5 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
BMCBI
2006
121views more  BMCBI 2006»
13 years 4 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
NAR
1998
140views more  NAR 1998»
13 years 4 months ago
Compilation of tRNA sequences and sequences of tRNA genes
Sequences of 3279 sequences of tRNA genes and tRNAs published up to December 1996 are included in the compilation. Alignment of the sequences, which is most compatible with the tR...
Mathias Sprinzl, Carsten Horn, Melissa Brown, Anat...