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» Qualitative Simulation of Large and Complex Genetic Regulati...
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WSC
2004
13 years 6 months ago
Using Dynamic Multiresolution Modelling to Analyze Large Material Flow Systems
The interactive, simulation-aided analysis of material flow systems is often done with the help of virtual reality. If a user wants to influence the simulation run, the simulation...
Wilhelm Dangelmaier, Bengt Mueck
ISMB
1993
13 years 6 months ago
Pattern Discovery in Gene Regulation: Designing an Analysis Environment
Interactions that determinecellular fate are exceedingly complex, can take place at different levels of gene regulation and involve a large numberof components(such as genes, prot...
Stella Veretnik, Bruce R. Schatz
BIOCOMP
2010
13 years 3 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
HYBRID
2004
Springer
13 years 10 months ago
Modeling Subtilin Production in Bacillus subtilis Using Stochastic Hybrid Systems
The genetic network regulating the biosynthesis of subtilin in Bacillus subtilis is modeled as a stochastic hybrid system. The continuous state of the hybrid system is the concentr...
Jianghai Hu, Wei Chung Wu, Shankar Sastry
JCB
2006
185views more  JCB 2006»
13 years 5 months ago
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...