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» Recognizing DNA Splicing
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DNA
2005
Springer
128views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Recognizing DNA Splicing
Abstract. Motivated by recent techniques developed for observing evolutionary dynamics of a single DNA molecule, we introduce a formal model for accepting an observed behavior of a...
Matteo Cavaliere, Natasa Jonoska, Peter Leupold
BMCBI
2010
103views more  BMCBI 2010»
13 years 5 months ago
A method of predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements
Background: Polymorphic variants and mutations disrupting canonical splicing isoforms are among the leading causes of human hereditary disorders. While there is a substantial evid...
Alexander G. Churbanov, Igor Vorechovsky, Chindo H...
DAM
2007
79views more  DAM 2007»
13 years 5 months ago
Recognizing splicing languages: Syntactic monoids and simultaneous pumping
We use syntactic monoid methods, together with an enhanced pumping lemma, to investigate the structure of splicing languages. We obtain an algorithm for deciding whether a regular...
Elizabeth Goode, Dennis Pixton
BICOB
2010
Springer
13 years 9 months ago
Algebraic Theory of DNA Recombination
In this paper we investigate the structure and representation of n-ary algebras arising from DNA recombination, where n is a number of DNA segments participating in recombination. ...
Sergei R. Sverchkov
BMCBI
2006
121views more  BMCBI 2006»
13 years 5 months ago
Splice site identification using probabilistic parameters and SVM classification
Background: Recent advances and automation in DNA sequencing technology has created a vast amount of DNA sequence data. This increasing growth of sequence data demands better and ...
A. K. M. A. Baten, Bill C. H. Chang, Saman K. Halg...