— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Current microprocessors aggressively exploit instructionlevel parallelism (ILP) through techniques such as multiple issue, dynamic scheduling, and non-blocking reads. Recent work ...
Parthasarathy Ranganathan, Vijay S. Pai, Hazim Abd...
Modern microprocessor designs continue to obtain impressive performance gains through increasing clock rates and advances in the parallelism obtained via micro-architecture design...
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...