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BMCBI
2007
154views more  BMCBI 2007»
13 years 6 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
BICOB
2009
Springer
14 years 24 days ago
A Fitness Distance Correlation Measure for Evolutionary Trees
Phylogenetics is concerned with inferring the genealogical relationships between a group of organisms (or taxa), and this relationship is usually expressed as an evolutionary tree....
Hyun Jung Park, Tiffani L. Williams
BMCBI
2005
137views more  BMCBI 2005»
13 years 6 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
NAR
2008
125views more  NAR 2008»
13 years 6 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
INFOCOM
2012
IEEE
11 years 8 months ago
Robust multi-source network tomography using selective probes
—Knowledge of a network’s topology and internal characteristics such as delay times or losses is crucial to maintain seamless operation of network services. Network tomography ...
Akshay Krishnamurthy, Aarti Singh