58 search results - page 1 / 12 » RuleMonkey: software for stochastic simulation of rule-based... |
BMCBI
2010
13 years 5 months ago
2010
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
TCSB
2010
13 years 3 months ago
2010
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
LICS
2010
IEEE
13 years 3 months ago
2010
IEEE
ing the differential semantics of rule-based models: exact and automated model reduction (Invited Lecture) Vincent Danos∗§, J´erˆome Feret†, Walter Fontana‡, Russell Harme...
SIMULATION
2010
12 years 11 months ago
2010
BMCBI
2004
13 years 4 months ago
2004
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...