18 search results - page 2 / 4 » SABRE: A Tool for Stochastic Analysis of Biochemical Reactio... |
IPPS
2006
IEEE
13 years 11 months ago
2006
IEEE
We present a translation of a generic stochastic process algebra model into a form suitable for stochastic simulation. By systematically generating rate equations from a process d...
CDC
2009
IEEE
13 years 10 months ago
2009
IEEE
— Models of biochemical reaction networks can be decomposed into a stoichiometric part and a kinetic part. The stoichiometric part describes the structural mass flows while the ...
BMCBI
2010
13 years 5 months ago
2010
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
BMCBI
2010
13 years 5 months ago
2010
Background: Sensitivity analysis is an indispensable tool for the analysis of complex systems. In a recent paper, we have introduced a thermodynamically consistent variance-based ...
RECOMB
2007
Springer
14 years 5 months ago
2007
Springer
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...