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» Selecting Optimal Oligonucleotide Primers for Multiplex PCR
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ISMB
1997
13 years 6 months ago
Selecting Optimal Oligonucleotide Primers for Multiplex PCR
Weinvestigate the problemof designingefficient multiplex PCRfor medical applications. Weshowthat the problemis NP-completeby transformation to the Multiple Choice Matchingproblema...
Pierre Nicodème, Jean-Marc Steyaert
BMCBI
2010
128views more  BMCBI 2010»
13 years 5 months ago
MPprimer: a program for reliable multiplex PCR primer design
Background: Multiplex PCR, defined as the simultaneous amplification of multiple regions of a DNA template or multiple DNA templates using more than one primer set (comprising a f...
Zhiyong Shen, Wubin Qu, Wen Wang, Yiming Lu, Yongh...
BMCBI
2006
112views more  BMCBI 2006»
13 years 5 months ago
GENOMEMASKER package for designing unique genomic PCR primers
Background: The design of oligonucleotides and PCR primers for studying large genomes is complicated by the redundancy of sequences. The eukaryotic genomes are particularly diffic...
Reidar Andreson, Eric Reppo, Lauris Kaplinski, Mai...
BIOINFORMATICS
2007
76views more  BIOINFORMATICS 2007»
13 years 5 months ago
Optimization of primer design for the detection of variable genomic lesions in cancer
Primer approximation multiplex PCR (PAMP) is a new experimental protocol for efficiently assaying structural variation in genomes. PAMP is particularly suited to cancer genomes w...
Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, De...
BMCBI
2008
105views more  BMCBI 2008»
13 years 5 months ago
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Background: Polymerase chain reaction (PCR) is used in directed sequencing for the discovery of novel polymorphisms. As the first step in PCR directed sequencing, effective PCR pr...
Kelvin Li, Anushka Brownley, Timothy B. Stockwell,...