Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Recent work showed that staging and abstract interpretation can be used to derive correct families of combinatorial circuits, and illustrated this technique with an in-depth analys...
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
An important challenge within hyper-heuristic research is to design search methodologies that work well, not only across different instances of the same problem, but also across di...
Edmund K. Burke, Timothy Curtois, Matthew R. Hyde,...
Abstract--In this paper, we describe the design for a co-processor for whole-genome phylogenetic reconstruction. Our current design performs a parallelized breakpoint median comput...