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» Sorting Signed Permutations by Inversions in O(nlogn) Time
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COCOON
2005
Springer
13 years 10 months ago
Perfect Sorting by Reversals
In computational biology, gene order data is often modelled as signed permutations. A classical problem in genome comparison is to detect conserved segments in a permutation, that ...
Marie-France Sagot, Eric Tannier
CORR
2010
Springer
120views Education» more  CORR 2010»
12 years 11 months ago
LRM-Trees: Compressed Indices, Adaptive Sorting, and Compressed Permutations
LRM-Trees are an elegant way to partition a sequence of values into sorted consecutive blocks, and to express the relative position of the first element of each block within a prev...
Jérémy Barbay, Johannes Fischer
BIOCOMP
2006
13 years 6 months ago
Improving the Efficiency of Sorting by Reversals
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biology. In this paper we present an improved algorithm for sorting by reversals. Our...
Yijie Han
CPM
2004
Springer
107views Combinatorics» more  CPM 2004»
13 years 8 months ago
Sorting by Reversals in Subquadratic Time
The problem of sorting a signed permutation by reversals is inspired by genome rearrangements in computational molecular biology. Given two genomes represented as two signed permut...
Eric Tannier, Marie-France Sagot
RECOMB
2007
Springer
14 years 5 months ago
How to Achieve an Equivalent Simple Permutation in Linear Time
The problem of Sorting signed permutations by reversals is a well studied problem in computational biology. The first polynomial time algorithm was presented by Hannenhalli and Pev...
Simon Gog, Martin Bader