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» Sorting by Block-Interchanges and Signed Reversals
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CPM
2004
Springer
107views Combinatorics» more  CPM 2004»
13 years 9 months ago
Sorting by Reversals in Subquadratic Time
The problem of sorting a signed permutation by reversals is inspired by genome rearrangements in computational molecular biology. Given two genomes represented as two signed permut...
Eric Tannier, Marie-France Sagot
COCOON
2005
Springer
13 years 10 months ago
Perfect Sorting by Reversals
In computational biology, gene order data is often modelled as signed permutations. A classical problem in genome comparison is to detect conserved segments in a permutation, that ...
Marie-France Sagot, Eric Tannier
IPL
2008
86views more  IPL 2008»
13 years 5 months ago
A more efficient algorithm for perfect sorting by reversals
We describe a new algorithm for the problem of perfect sorting a signed permutation by reversals. The worst-case time complexity of this algorithm is parameterized by the maximum p...
Sèverine Bérard, Cedric Chauve, Chri...
DAM
2007
120views more  DAM 2007»
13 years 5 months ago
Advances on sorting by reversals
Theproblemofsortingsignedpermutationsbyreversalsisinspiredbygenomerearrangementproblemsincomputationalmolecular biology. Given two genomes represented as signed permutations of th...
Eric Tannier, Anne Bergeron, Marie-France Sagot
RECOMB
2006
Springer
14 years 5 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch