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» Sparse RNA Folding: Time and Space Efficient Algorithms
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CPM
2009
Springer
90views Combinatorics» more  CPM 2009»
13 years 8 months ago
Sparse RNA Folding: Time and Space Efficient Algorithms
Rolf Backofen, Dekel Tsur, Shay Zakov, Michal Ziv-...
BMCBI
2004
151views more  BMCBI 2004»
13 years 4 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
RECOMB
2010
Springer
13 years 6 months ago
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding
Raheleh Salari, Mathias Möhl, Sebastian Will,...
APBC
2004
173views Bioinformatics» more  APBC 2004»
13 years 6 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...
BMCBI
2005
306views more  BMCBI 2005»
13 years 4 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...