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JCB
2002
111views more  JCB 2002»
13 years 5 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
BMCBI
2007
175views more  BMCBI 2007»
13 years 6 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
RECOMB
2003
Springer
14 years 6 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm
ICSE
2004
IEEE-ACM
14 years 6 months ago
Automated Generation of Test Programs from Closed Specifications of Classes and Test Cases
Most research on automated specification-based software testing has focused on the automated generation of test cases. Before a software system can be tested, it must be set up ac...
Wee Kheng Leow, Siau-Cheng Khoo, Yi Sun
BMCBI
2004
133views more  BMCBI 2004»
13 years 6 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy