In this article, we propose a new method for computing rare maximal exact matches between multiple sequences. A rare match between k sequences S1; : : :; Sk is a string that occur...
This paper analyses the efficiency of different data structures for detecting overlap in digital documents. Most existing approaches use some hash function to reduce the space req...
A suffix vector of a string is an index data structure equivalent to a suffix tree. It was first introduced by Monostori et al. in 2001 [9, 10, 11]. They proposed a linear constru...
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...