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JCB
2008
122views more  JCB 2008»
13 years 5 months ago
Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences
In this article, we propose a new method for computing rare maximal exact matches between multiple sequences. A rare match between k sequences S1; : : :; Sk is a string that occur...
Enno Ohlebusch, Stefan Kurtz
ACSC
2001
IEEE
13 years 9 months ago
Efficiency of Data Structures for Detecting Overlaps in Digital Documents
This paper analyses the efficiency of different data structures for detecting overlap in digital documents. Most existing approaches use some hash function to reduce the space req...
Krisztián Monostori, Arkady B. Zaslavsky, H...
TCS
2008
13 years 5 months ago
On-line construction of compact suffix vectors and maximal repeats
A suffix vector of a string is an index data structure equivalent to a suffix tree. It was first introduced by Monostori et al. in 2001 [9, 10, 11]. They proposed a linear constru...
Élise Prieur, Thierry Lecroq
RECOMB
2009
Springer
14 years 5 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...