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JCB
2006
124views more  JCB 2006»
13 years 4 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
RECOMB
2005
Springer
14 years 4 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
ALMOB
2008
131views more  ALMOB 2008»
13 years 4 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
PLDI
2012
ACM
11 years 7 months ago
Test-case reduction for C compiler bugs
To report a compiler bug, one must often find a small test case that triggers the bug. The existing approach to automated test-case reduction, delta debugging, works by removing ...
John Regehr, Yang Chen, Pascal Cuoq, Eric Eide, Ch...
DAC
2004
ACM
13 years 10 months ago
Area-efficient instruction set synthesis for reconfigurable system-on-chip designs
Silicon compilers are often used in conjunction with Field Programmable Gate Arrays (FPGAs) to deliver flexibility, fast prototyping, and accelerated time-to-market. Many of these...
Philip Brisk, Adam Kaplan, Majid Sarrafzadeh