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» The Protein Data Bank and lessons in data management
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BIB
2004
55views more  BIB 2004»
13 years 5 months ago
The Protein Data Bank and lessons in data management
Philip E. Bourne, John D. Westbrook, Helen M. Berm...
BMCBI
2002
137views more  BMCBI 2002»
13 years 5 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2008
175views more  BMCBI 2008»
13 years 5 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
ISMB
1997
13 years 7 months ago
PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank)
Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, ...
BMCBI
2005
116views more  BMCBI 2005»
13 years 5 months ago
SuperLigands - a database of ligand structures derived from the Protein Data Bank
Background: Currently, the PDB contains approximately 29,000 protein structures comprising over 70,000 experimentally determined three-dimensional structures of over 5,000 differe...
Elke Michalsky, Mathias Dunkel, Andrean Goede, Rob...