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» The SUPERFAMILY database in 2007: families and functions
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ECCB
2008
IEEE
13 years 12 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
NAR
2000
120views more  NAR 2000»
13 years 5 months ago
SCOP: a Structural Classification of Proteins database
The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classificati...
Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, ...
JCB
2000
107views more  JCB 2000»
13 years 5 months ago
A Discriminative Framework for Detecting Remote Protein Homologies
A new method for detecting remote protein homologies is introduced and shown to perform well in classifying protein domains by SCOP superfamily. The method is a variant of support...
Tommi Jaakkola, Mark Diekhans, David Haussler
NAR
2011
187views Computer Vision» more  NAR 2011»
12 years 8 months ago
The RNA helicase database
RNA helicases are ubiquitous and essential enzymes that function in nearly all aspects of RNA metabolism. The RNA helicase database (www .rnahelicase.org) integrates the wealth of...
Anja Jankowsky, Ulf-Peter Guenther, Eckhard Jankow...
NAR
2007
96views more  NAR 2007»
13 years 5 months ago
New developments in the InterPro database
InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, S...
Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood...