139 search results - page 2 / 28 » The molecular modeling toolkit: A new approach to molecular ... |
BMCBI
2005
13 years 5 months ago
2005
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
BIOCOMP
2006
13 years 6 months ago
2006
- We developed a method of reverse engineering to compare the behaviour the enzyme proteins with the existing standard concepts. Our work is based on the strong assumption from the...
HPCC
2005
Springer
13 years 10 months ago
2005
Springer
In this paper a new and powerful computer simulation capability for the characterization of carbonaceous nanoparticle assemblies across multiple, connected scales, starting from th...
WSC
2008
13 years 7 months ago
2008
Spatial phenomena attract increasingly interest in computational biology. Molecular crowding, i.e. a dense population of macromolecules, is known to have a significant impact on t...
BMCBI
2008
13 years 5 months ago
2008
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...