Sciweavers

65 search results - page 2 / 13
» Topology Search over Biological Databases
Sort
View
BMCBI
2006
137views more  BMCBI 2006»
13 years 5 months ago
INTEGRATOR: interactive graphical search of large protein interactomes over the Web
Background: The rapid growth of protein interactome data has elevated the necessity and importance of network analysis tools. However, unlike pure text data, network search spaces...
Aaron N. Chang, Jason McDermott, Zachary Frazier, ...
RECOMB
2009
Springer
14 years 5 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
SISAP
2008
IEEE
175views Data Mining» more  SISAP 2008»
13 years 11 months ago
Anytime K-Nearest Neighbor Search for Database Applications
Many contemporary database applications require similarity-based retrieval of complex objects where the only usable knowledge of its domain is determined by a metric distance func...
Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. ...
BIODATAMINING
2008
117views more  BIODATAMINING 2008»
13 years 5 months ago
Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database
Background: In computer science, database systems are based on the relational model founded by Edgar Codd in 1970. On the other hand, in the area of biology the word 'databas...
Masanori Arita, Kazuhiro Suwa
BMCBI
2011
12 years 8 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes