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» Topology and prediction of RNA pseudoknots
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JCB
2008
102views more  JCB 2008»
13 years 5 months ago
Canonical RNA Pseudoknot Structures
In this paper, we study k-noncrossing, -canonical RNA pseudoknot structures with minimum arc-length greater or equal to four. Let T OE4 k; .n/ denote the number of these structure...
Gang Ma, Christian M. Reidys
BIBE
2005
IEEE
121views Bioinformatics» more  BIBE 2005»
13 years 11 months ago
RNA Pseudoknot Prediction Using Term Rewriting
RNA plays a critical role in mediating every step of cellular information transfer from genes to functional proteins. Pseudoknots are widely occurring structural motifs found in a...
Xuezheng Fu, Hao Wang, William L. Harrison, Robert...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
13 years 10 months ago
Conserved RNA Pseudoknots
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
C. Thurner, Ivo L. Hofacker, Peter F. Stadler
CANDC
2006
ACM
13 years 5 months ago
An RNA folding algorithm including pseudoknots based on dynamic weighted matching
On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
Haijun Liu, Dong Xu, Jianlin Shao, Yifei Wang
ICPP
2006
IEEE
13 years 11 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal