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» Visualization of unfavorable interactions in protein folds
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BIOINFORMATICS
2008
111views more  BIOINFORMATICS 2008»
13 years 4 months ago
Visualization of unfavorable interactions in protein folds
Christian X. Weichenberger, Piotr Byzia, Manfred J...
BIOINFORMATICS
2006
124views more  BIOINFORMATICS 2006»
13 years 4 months ago
Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins
Motivation: In many proteins, helix-helix interactions can be critical to establishing protein conformation (folding) and dynamics, as well as determining associations between pro...
Anne E. Counterman Burba, Ursula Lehnert, Eric Z. ...
NAR
2007
116views more  NAR 2007»
13 years 4 months ago
Protein knot server: detection of knots in protein structures
KNOTS (http://knots.mit.edu) is a web server that detects knots in protein structures. Several protein structures have been reported to contain intricate knots. The physiological ...
Grigory Kolesov, Peter Virnau, Mehran Kardar, Leon...
BIBE
2006
IEEE
112views Bioinformatics» more  BIBE 2006»
13 years 10 months ago
Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration
The analysis of alignments of functionally equivalent proteins can reveal regularities such as correlated positions or residue patterns which are important to ensure a specific f...
Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus...
BMCBI
2010
141views more  BMCBI 2010»
13 years 4 months ago
Computing and visually analyzing mutual information in molecular co-evolution
Background: Selective pressure in molecular evolution leads to uneven distributions of amino acids and nucleotides. In fact one observes correlations among such constituents due t...
Sebastian Bremm, Tobias Schreck, Patrick Boba, Ste...