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    BMCBI
    2006
    150views more  BMCBI 2006»
    Protein structure similarity from principle component correlation analysis
    13 years 4 months ago
    Protein structure similarity from principle component correlation analysis
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    Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
    Xiaobo Zhou, James Chou, Stephen T. C. Wong
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    BMCBI
    2006
    120views more  BMCBI 2006»
    Optimizing amino acid substitution matrices with a local alignment kernel
    13 years 4 months ago
    Optimizing amino acid substitution matrices with a local alignment kernel
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    Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
    Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
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    NAR
    2000
    111views more  NAR 2000»
    ProtoMap: automatic classification of protein sequences and hierarchy of protein families
    13 years 4 months ago
    ProtoMap: automatic classification of protein sequences and hierarchy of protein families
    Download  cmbi.bjmu.edu.cn
    The ProtoMap site offers an exhaustive classification of all proteins in the SWISS-PROT database, into groups of related proteins. The classification is based on analysis of all p...
    Golan Yona, Nathan Linial, Michal Linial
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    BMCBI
    2005
    198views more  BMCBI 2005»
    Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
    13 years 4 months ago
    Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
    Download  www.biomedcentral.com
    Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
    Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
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    BIBM
    2008
    IEEE
    125views Bioinformatics» more  BIBM 2008»
    On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification
    13 years 6 months ago
    On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification
    Download  www.cs.rutgers.edu
    Recent studies in protein sequence analysis have leveraged the power of unlabeled data. For example, the profile and mismatch neighborhood kernels have shown significant improveme...
    Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
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