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DNA
2008
Springer
13 years 7 months ago
DNA as a Universal Substrate for Chemical Kinetics
David Soloveichik, Georg Seelig, Erik Winfree
BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
An End-to-End Process for Cancer Identification from Images of Lung Tissue
— This research describes a non-interactive process that applies several forms of computational intelligence to the task of classifying biopsy lung tissue samples based on visual...
Walker H. Land Jr., Daniel W. McKee, Tatyana Zhuko...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
BIBE
2007
IEEE
136views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
A Two-Stage Gene Selection Algorithm by Combining ReliefF and mRMR
Abstract—Gene expression data usually contains a large number of genes, but a small number of samples. Feature selection for gene expression data aims at finding a set of genes ...
Yi Zhang, Chris H. Q. Ding, Tao Li
BIBE
2007
IEEE
153views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approach
—DNA microarray technologies provide means for monitoring in the order of tens of thousands of gene expression levels quantitatively and simultaneously. However data generated in...
Juliette Blanchet, Matthieu Vignes
DNA
2006
Springer
143views Bioinformatics» more  DNA 2006»
13 years 7 months ago
A Framework for Modeling DNA Based Molecular Systems
Recent successes in building large scale DNA nanostructures and in constructing DNA nanomechanical devices have inspired scientists to design more complex nanoscale systems. The de...
Sudheer Sahu, Bei Wang, John H. Reif
DNA
2006
Springer
130views Bioinformatics» more  DNA 2006»
13 years 7 months ago
Displacement Whiplash PCR: Optimized Architecture and Experimental Validation
Whiplash PCR-based methods of biomolecular computation (BMC), while highly-versatile in principle, are well-known to suffer from a simple but serious form of self-poisoning known a...
John A. Rose, Ken Komiya, Satsuki Yaegashi, Masami...
DNA
2006
Springer
13 years 7 months ago
Sequence Design for Stable DNA Tiles
Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, A...