Sciweavers

DNA
2006
Springer
100views Bioinformatics» more  DNA 2006»
13 years 7 months ago
In Search of Optimal Codes for DNA Computing
Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew...
CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
13 years 7 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
CSB
2005
IEEE
165views Bioinformatics» more  CSB 2005»
13 years 7 months ago
Sequential Diagonal Linear Discriminant Analysis (SeqDLDA) for Microarray Classification and Gene Identification
In microarray classification we are faced with a very large number of features and very few training samples. This is a challenge for classical Linear Discriminant Analysis (LDA),...
Roger Pique-Regi, Antonio Ortega, Shahab Asgharzad...
CSB
2005
IEEE
128views Bioinformatics» more  CSB 2005»
13 years 7 months ago
Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes
In our effort to elucidate the systems biology of the model organism, Escherichia coli, we have developed a mathematical model that simulates the allosteric regulation for threoni...
Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, ...
CSB
2005
IEEE
233views Bioinformatics» more  CSB 2005»
13 years 7 months ago
PSIST: Indexing Protein Structures Using Suffix Trees
Feng Gao, Mohammed Javeed Zaki
BIBE
2005
IEEE
13 years 7 months ago
A Multi-Level Approach to SCOP Fold Recognition
The classification of proteins based on their structure can play an important role in the deduction or discovery of protein function. However, the relatively low number of solved...
Keith Marsolo, Srinivasan Parthasarathy, Chris H. ...
BIRD
2008
Springer
109views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
A Robust Class of Stable Proteins in the 2D HPC Model
The inverse protein folding problem is that of designing an amino acid sequence which has a prescribed native protein fold. This problem arises in drug design where a particular st...
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...
BIRD
2008
Springer
158views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
A Computational Method for Reconstructing Gapless Metabolic Networks
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko ...
BIRD
2008
Springer
159views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
Exploration of Evolutionary Relations between Protein Structures
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
Natalja Kurbatova, Juris Viksna