NIPS
2004
13 years 6 months ago
2004
Amino acid profiles, which capture position-specific mutation probabilities, are a richer encoding of biological sequences than the individual sequences themselves. However, profi...
APBC
2004
13 years 6 months ago
2004
The nature of specific protein-nucleic acid interaction between restriction endonucleases (RE) and their recognition sequences (RS) was studied by bioinformatics methods. It was f...
CMSB
2008
Springer
13 years 6 months ago
2008
Springer
Abstract. We present a formal analysis of amino acid replacement during mRNA translation. Building on an abstract stochastic model of arrival of tRNAs and their processing at the r...
AUSDM
2006
Springer
13 years 8 months ago
2006
Springer
Abstract. Lot of research has gone into understanding the composition and nature of proteins, still many things remain to be understood satisfactorily. It is now generally believed...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
CSB
2003
IEEE
13 years 10 months ago
2003
IEEE
Protein sequence analysis is an important tool to decode the logic of life. One of the most important similarity measures in this area is the edit distance between amino acids of ...
WABI
2004
Springer
13 years 10 months ago
2004
Springer
Abstract. Contact maps are a model to capture the core information in the structure of biological molecules, e.g., proteins. A contact map consists of an ordered set ¡ of elements...
IJCNN
2006
IEEE
13 years 11 months ago
2006
IEEE
— The ability to identify protein binding sites and to detect specific amino acid residues that contribute to the specificity and affinity of protein interactions has importan...
ECAL
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. Proteins, under native conditions, fold to specific 3D structures according to their 1D amino acid sequence, which in turn is defined by the genetic code. The specific...
BIRD
2007
Springer
13 years 11 months ago
2007
Springer
More and more proteins have been observed to display functions through intrinsic disorder. Such structurally flexible regions are shown to play important roles in biological proces...