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ISBRA
2007
Springer
13 years 11 months ago
The Solution Space of Sorting by Reversals
Marília D. V. Braga, Marie-France Sagot, Ce...
ISBRA
2007
Springer
13 years 11 months ago
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods
The biological interpretation of large-scale gene expression data is one of the challenges in current bioinformatics. The state-of-theart approach is to perform clustering and then...
Italo Zoppis, Daniele Merico, Marco Antoniotti, Bu...
BIRD
2007
Springer
150views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Bayesian Inference for 2D Gel Electrophoresis Image Analysis
Two-dimensional gel electrophoresis (2DGE) is a technique to separate individual proteins in biological samples. The 2DGE technique results in gel images where proteins appear as d...
Ji Won Yoon, Simon J. Godsill, ChulHun Kang, Tae-S...
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Annotation of LC/ESI-MS Mass Signals
Abstract. Mass spectrometry is the work-horse technology of the emerging eld of metabolomics. The identication of mass signals remains the largest bottleneck for a non-targeted a...
Ralf Tautenhahn, Christoph Böttcher, Steffen ...
BIRD
2007
Springer
117views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction
More and more proteins have been observed to display functions through intrinsic disorder. Such structurally flexible regions are shown to play important roles in biological proces...
Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Ye...
BIRD
2007
Springer
13 years 12 months ago
Analysing Periodic Phenomena by Circular PCA
Experimental time courses often reveal a nonlinear behaviour. Analysing these nonlinearities is even more challenging when the observed phenomenon is cyclic or oscillatory. This me...
Matthias Scholz
BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
BIRD
2007
Springer
154views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Mining Spatial Gene Expression Data for Association Rules
Abstract. We analyse data from the Edinburgh Mouse Atlas GeneExpression Database (EMAGE) which is a high quality data source for spatio-temporal gene expression patterns. Using a n...
Jano I. van Hemert, Richard A. Baldock
BIRD
2007
Springer
128views Bioinformatics» more  BIRD 2007»
13 years 12 months ago
Efficient and Scalable Indexing Techniques for Biological Sequence Data
We investigate indexing techniques for sequence data, crucial in a wide variety of applications, where efficient, scalable, and versatile search algorithms are required. Recent res...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...