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CIBCB
2009
IEEE
8 years 7 months ago
An automatic gene ontology software tool for bicluster and cluster comparisons
We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster...
Fadhl M. Al-Akwaa, Yasser M. Kadah
CIBCB
2009
IEEE
8 years 7 months ago
Shape modeling and clustering of white matter fiber tracts using fourier descriptors
Reliable shape modeling and clustering of white matter fiber tracts is essential for clinical and anatomical studies that use diffusion tensor imaging (DTI) tractography techniques...
Xuwei Liang, Qi Zhuang, Ning Cao, Jun Zhang
CIBCB
2009
IEEE
8 years 10 months ago
An application of the metric access methods to the mass spectrometry data
Mass spectrometry is a very popular method for protein and peptide identification nowadays. Abundance of data generated in this way grows exponentially every year and although ther...
Jiri Novák, David Hoksza
CIBCB
2009
IEEE
8 years 10 months ago
Application of machine learning approaches on quantitative structure activity relationships
Machine Learning techniques are successfully applied to establish quantitative relations between chemical structure and biological activity (QSAR), i.e. classify compounds as activ...
Mariusz Butkiewicz, Ralf Mueller, Danilo Selic, Er...
CIBCB
2009
IEEE
8 years 10 months ago
DDPIn - Distance and density based protein indexing
Protein structure similarity and classification methods have many applications in protein function prediction and associated fields (e.g. drug discovery). In this paper, we propose...
David Hoksza
CIBCB
2009
IEEE
8 years 10 months ago
A framework for the application of decision trees to the analysis of SNPs data
Data mining is the analysis of experimental datasets to extract trends and relationships that can be meaningful for the user. In genetic studies these techniques have revealed inte...
Linda Fiaschi, Jonathan M. Garibaldi, Natalio Kras...
CIBCB
2009
IEEE
8 years 10 months ago
rnaDesign: Local search for RNA secondary structure design
Abstract-- The RNA secondary structure design (SSD) problem is a recently emerging research topic motivated by applications such as customized drug design and the self-assembly of ...
Denny C. Dai, Herbert H. Tsang, Kay C. Wiese
CIBCB
2009
IEEE
8 years 10 months ago
Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations
Although Ordinary Differential Equations (ODEs) have been used to model Genetic Regulatory Networks (GRNs) in many previous works, their steady-state behaviors are not well studied...
Haixin Wang, Lijun Qian, Edward R. Dougherty
CIBCB
2009
IEEE
8 years 10 months ago
Improved prediction of trans-membrane spans in proteins using an artificial neural network
Tools for the identification of trans-membrane spans from the protein sequence are widely used in the experimental community. Computational structural biology seeks to increase the...
Julia Koehler, Ralf Mueller, Jens Meiler
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