BMCBI
2011
12 years 12 months ago
2011
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
JCP
2008
13 years 5 months ago
2008
In this paper, gene sets, instead of individual genes, are used in the genetic process to speed up convergence. A gene-set mutation operator is proposed, which can make several nei...
JBI
2008
13 years 5 months ago
2008
Gene Ontology (GO) terms are often used to interpret the results of microarray experiments. The most common approach is to perform Fisher's exact tests to find gene sets anno...
BMCBI
2007
13 years 5 months ago
2007
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
BMCBI
2008
13 years 5 months ago
2008
Background: The analysis of gene sets has become a popular topic in recent times, with researchers attempting to improve the interpretability and reproducibility of their microarr...
BMCBI
2008
13 years 5 months ago
2008
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
BMCBI
2007
13 years 5 months ago
2007
Background: Gene-set analysis evaluates the expression of biological pathways, or a priori defined gene sets, rather than that of individual genes, in association with a binary ph...
BMCBI
2010
13 years 5 months ago
2010
Background: Different microarray studies have compiled gene lists for predicting outcomes of a range of treatments and diseases. These have produced gene lists that have little ov...
AUSAI
2007
Springer
13 years 9 months ago
2007
Springer
Abstract. One of the key applications of microarray studies is to select and classify gene expression profiles of cancer and normal subjects. In this study, two hybrid approaches
AIME
2007
Springer
13 years 11 months ago
2007
Springer
This paper presents a novel method integrating gene-gene interaction information and Gene Ontology for the construction of new gene sets that are potentially enriched. Enrichment o...