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ISMB
1994
8 years 5 months ago
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence
A new version of the GRAIL system (Uberbacher and Mural, 1991; Mural et al., 1992; Uberbacher et al., 1993), called GRAILII, has recently been developed (Xu et al., 1994). GRAILII...
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manes...
ISMB
1994
8 years 5 months ago
Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence
Weconsider the problem of parsing a sequence into different classes of subsequences.Twocommonexamplesare finding the exons and introns in genomicsequences and identifying the seco...
Gary D. Stormo, David Haussler
ISMB
1994
8 years 5 months ago
GeneQuiz: A Workbench for Sequence Analysis
Wepresent the prototype of a software system, cMledGeneQuiz,for large-scale biological sequence analysis. The system was designed to meet the needs that arise in computational seq...
Michael Scharf, Reinhard Schneider, Georg Casari, ...
ISMB
1994
8 years 5 months ago
Geometric Problems in Molecular Biology and Robotics
Someof the geometric problemsof interest to molecular biologists havemacroscopicanaloguesin the field of robotics. Twoexamples of such analogies are those between protein docking ...
David Parsons, John F. Canny
ISMB
1994
8 years 5 months ago
The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein
Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa...
ISMB
1994
8 years 5 months ago
Kinematic Manipulation of Molecular Chains Subject to Rigid Constraint
Wepresent algorithms for kinematic manipulation of molecular chains subject to fixed bond lengths and bond angles. They are useful for calculating conformations of a molecule subj...
Dinesh Manocha, Yunshan Zhu
ISMB
1994
8 years 5 months ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe
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