Sciweavers

RECOMB
2002
Springer
14 years 5 months ago
Discovering local structure in gene expression data: the order-preserving submatrix problem
This paper concerns the discovery of patterns in gene expression matrices, in which each element gives the expression level of a given gene in a given experiment. Most existing me...
Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Y...
RECOMB
2002
Springer
14 years 5 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
RECOMB
2002
Springer
14 years 5 months ago
Monotony of surprise and large-scale quest for unusual words
The problem of characterizing and detecting recurrent sequence patterns such as substrings or motifs and related associations or rules is variously pursued in order to compress da...
Alberto Apostolico, Mary Ellen Bock, Stefano Lonar...
RECOMB
2002
Springer
14 years 5 months ago
Provably sensitive Indexing strategies for biosequence similarity search
The field of algorithms for pairwisc biosequence similarity search is dominated by heuristic methods of high efficiency but uncertain sensitivity. One reason that more formal stri...
Jeremy Buhler
RECOMB
2002
Springer
14 years 5 months ago
Simulating a Coalescent Process with Recombination and Ascertainment
A new method is presented for use in simulating samples of disease and normal chromosomes bearing multiple linked genetic markers under a neutral model of mutation, genetic drift, ...
Ying Wang, Bruce Rannala
RECOMB
2002
Springer
14 years 5 months ago
Inferring Piecewise Ancestral History from Haploid Sequences
There has been considerable recent interest in the use of haplotype structure to aid in the design and analysis of case-control association studies searching for genetic predictors...
Russell Schwartz, Andrew G. Clark, Sorin Istrail
RECOMB
2002
Springer
14 years 5 months ago
A Survey of Computational Methods for Determining Haplotypes
It is widely anticipated that the study of variation in the human genome will provide a means of predicting risk of a variety of complex diseases. Single nucleotide polymorphisms (...
Bjarni V. Halldórsson, Vineet Bafna, Nathan...
RECOMB
2002
Springer
14 years 5 months ago
An Overview of Combinatorial Methods for Haplotype Inference
A current high-priority phase of human genomics involves the development of a full Haplotype Map of the human genome [23]. It will be used in large-scale screens of populations to...
Dan Gusfield