CSB
2005
IEEE
13 years 10 months ago
2005
IEEE
Conformational switching in the secondary structure of RNAs has recently attracted considerable attention, fostered by the discovery of ‘riboswitches’ in living organisms. The...
CIBCB
2005
IEEE
13 years 10 months ago
2005
IEEE
— Part of the challenge of modeling protein sequences is their discrete nature. Many of the most powerful statistical and learning techniques are applicable to points in a Euclid...
CEC
2005
IEEE
13 years 10 months ago
2005
IEEE
New results are presented for the prediction of secondary structure information for protein sequences using Hidden Markov Models (HMMs) evolved using a Genetic Algorithm (GA). We a...
BIRD
2007
Springer
13 years 11 months ago
2007
Springer
More and more proteins have been observed to display functions through intrinsic disorder. Such structurally flexible regions are shown to play important roles in biological proces...
ICASSP
2007
IEEE
13 years 11 months ago
2007
IEEE
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
ICASSP
2007
IEEE
13 years 11 months ago
2007
IEEE
We propose an iterative probabilistic algorithm for estimation of RNA secondary structure using sequence data from two homologous sequences. The method is intended to exploit inte...
ICASSP
2008
IEEE
13 years 11 months ago
2008
IEEE
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
As one of the earliest problems in computational biology, RNA secondary structure prediction (sometimes referred to as "RNA folding") problem has attracted attention agai...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...