oGNM: online computation of structural dynamics using the Gaussian Network Model

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An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towards understanding molecular mechanisms relevant to biological function. We present a web-based system, oGNM that enables users to calculate online the shape and dispersion of normal modes of motion for proteins, oligonucleotides and their complexes, or associated biological units, using the Gaussian Network Model (GNM). Computations with the new engine are 5

Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher

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Gaussian Network Model | NAR 2006 | Normal Mode | Normal Mode Analyses |

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Added	14 Dec 2010
Updated	14 Dec 2010
Type	Journal
Year	2006
Where	NAR
Authors	Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher Jon Jursa, Shann-Ching Chen, Hassan A. Karimi, Ivet Bahar

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oGNM: online computation of structural dynamics using the Gaussian Network Model

Gaussian Network Model | NAR 2006 | Normal Mode | Normal Mode Analyses |

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