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2005
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Using Parallel Algorithms for Searching Molecular Sequence Databases

11 years 11 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity of time. The parallel program implementation has carried out in C on an available twenty processing nodes clustering architecture using a model of parallel programming systems, the MPI (Message-Passing Interface), which is as library of subroutines. We use one of the possible approaches to reduce the time spent on comparisons of molecular database sequences by distributing the data among processors, which achieves a linear speedup (time) and requires constant space memory per processor [6].
Carla Correa Tavares dos Reis, Rubem P. Mondaini
Added 24 Jun 2010
Updated 24 Jun 2010
Type Conference
Year 2005
Where CSB
Authors Carla Correa Tavares dos Reis, Rubem P. Mondaini
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