WABI
13 years 10 months ago
2004 Springer 
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
WABI
13 years 10 months ago
2004 Springer 
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
WABI
13 years 10 months ago
2004 Springer
Abstract. Haplotype inference problem asks for a set of haplotypes explaining a given set of genotypes. Popular software tools for haplotype inference (e.g., PHASE, HAPLOTYPER) as ...
WABI
13 years 10 months ago
2004 Springer
Abstract. In this paper we present a more efficient algorithm for comparison of minisatellites which has complexity O(n 3 + m 3 + mn 2 + nm 2 + mn) where n and m are the lengths of...
WABI
13 years 10 months ago
2004 Springer
Conserved intervals were recently introduced as a measure of similarity between genomes whose genes have been shuffled during evolution by genomic rearrangements. Phylogenetic reco...
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Bioinformatics