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PSB
2001
11 years 7 months ago
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
This paper discusses the issues involved in implementing a dynamic programming algorithm for biological sequence comparison on a generalpurpose parallel computing platform based o...
W. S. Martins, Juan del Cuvillo, F. J. Useche, Kev...
IJIT
2004
11 years 7 months ago
Parallezation Protein Sequence Similarity Algorithms using Remote Method Interface
One of the major problems in genomic field is to perform sequence comparison on DNA and protein sequences. Executing sequence comparison on the DNA and protein data is a computatio...
Mubarak Saif Mohsen, Zurinahni Zainol, Rosalina Ab...
IPPS
2003
IEEE
11 years 11 months ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
IPPS
2009
IEEE
12 years 7 days ago
Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for ļ¬nding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
11 years 11 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
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